News

  • X!TandemPipeline C++ version 0.4.27

    Some changes since the last announced version 0.4.3 :

    • Builtin TDF data reader from TimsTofPRO : X!Tandem identifications, MS2 spectrum visualization, XIC extraction
    • Ion mobility ready
    • Complete GUI to configure and launch MassChroQ
    • Improvement of the mzIdentML reader
    • Overall GUI improvements

    Thanks a lot to the PAPPSO team for these improvements, especially to Thomas Renne, bioinformatics trainee, that has developped many new features.

  • X!TandemPipeline C++ version 0.4.3

    X!TandemPipeline C++ version 0.4.3

    Here is the changelog since last announced 0.2.38 version :

    • better XICs display
    • new window to display the list of MS run identifications : access to the parameters of each identification, quality control of MSruns (assigned percentages, MS1 MS2 counts …)
    • better masschroqML output, with the choice of the best MS run to use in the alignment, either automatically or manuall.
    • suppor of the modified version of X!Tandem from the TPP X!Tandem TPP (used to build DIA libraries)
    • new PAPPSOms++ library bringing powerfull MS filters, raw data file parsers…

    Many thanks to the PAPPSO team and specially to Thomas Renne, bioinformatics apprentice, for the development of most of these new features.

  • PAPPSO participates in the "COVID-19 Mass Spectrometry Coalition" and brings its expertise to several research projects concerning the SARS-CoV-2

    PAPPSO joined the COVID-19 Mass Spectrometry Coalition initiated by the British Mass Spectrometry Society and for which the objective is to use mass spectrometry to reduce the harm caused by thje SARS-Cov2 virus. Samples, expertises, data and protocols will be shared between mass spectrometry experts to optimize and accelerate the development of diagnostic and virus characterization and tracking.