PROTÉOME VERT Days on May 26 and 27, 2025

INRAE, 27 rue Sully, Dijon

The Green Proteome Days are open to people interested in plant proteomics. You are invited to present new methodological developments in the fields of sample preparation, mass spectrometry and bioinformatics analysis as well as biological results obtained with proteomics. The conference is organized by the Green Proteome network.

ProteoBench is an open platform for benchmarking proteomics data analysis workflows.

There several modules each one focusing on a specific Protomics technic:

Important modifications since 1.0.10 :

• Complete support for the Sage identification engine
• Integrating a modified version of X!Tandem that can read directly mzML files and TimsTOF raw data
• Switch from HTCondor to Slurm for HPC cluster support
• Bunch of fix on reported issues
• Support for ProteoBench metadata for Sage identifications
• Numerous GUI improvements

Complete changelog

The PAPPSO users’ scientific council will take place on September 23 and will be open to all, users of the facility or interested by its activities. It will be available by video via the following link (https://bbb.visio.inrae.fr/b/oli-nt9-82w-eav).

Important modifications since 1.0.3 :

• Export file format for ProteoBench
• Windows setup now including X!Tandem executables
• Better GUI for statistical analysis using MCQR 0.6.14

Complete changelog