i2MassChroQ is a free software (GPL v3) that helps the user
filter and group peptide/protein identifications from MS/MS mass spectra; perform area-under-the-peak XIC-based quantification of proteins.
X!TandemPipeline Java is the ancestor of the new C++ X!TandemPipeline. Please refer to the new version X!TandemPipeline
X!TandemPipeline ZIP archive (Windows or Linux) This application requires at least java 1.
MassChroQ (Mass Chromatogram Quantification) is a fast and versatile software that performs alignment, XIC extraction, peak detection and quantification on data obtained from Liquid Chromatography-Mass Spectrometry (LC-MS) techniques.