mineXpert2 is a free software package licensed under the GPLv3+ that helps you to visualize and explore MSⁿ mass spectrometric data.

i2MassChroQ is a free software (GPL v3) that helps the user

• filter and group peptide/protein identifications from MS/MS mass spectra;
• perform area-under-the-peak XIC-based quantification of proteins.

i2MassChroQ is fully described in:

Description

MCQR is an R package dedicated to statistical analysis of proteomic data. The goal of the MCQR is to provide a consistent set of functions facilitating proteomics data statistical analysis. It can be used without extensive programming knowledge with R.

MassChroQ (Mass Chromatogram Quantification) is a fast and versatile software that performs alignment, XIC extraction, peak detection and quantification on data obtained from Liquid Chromatography-Mass Spectrometry (LC-MS) techniques.

X!TandemPipeline has been renamed into i2MassChroQ