ALL-P is a statistical framework based on a hierarchical modeling that takes into account shared peptide information for estimating protein abundances.
- BEADS is a program for spot detection on 2-D gel images. It is based on an analogy with beads flowing uphill on the surface of the gel image and on the analysis of their paths.
- The classical method for protein identification of LC-MS/MS data uses database searching and matching, as it is the case in Mascot, Sequest or X!
- This Java application, stores all your sequence databases in a single folder (repository). It offers : conservation of metadata : database origin, species, number of protein, download site, … translation of DNA into protein creation of decoy protein databases (protein reverse, random, peptide reverse combination of different existing databases This application can managed multiple repository.
- description SpectrumFinder is a simple command line tool to compare a collection of reference spectrum to other spectrum from one or more mzXML files.