With MassChroQ you can quantify :

  • label-free as well as isotopic labeled data;
  • high as well as low resolution spectrometer systems data.

Moreover, MassChroQ :

  • automatically takes into account the identified peptides/proteins obtained from any identification software provided they are placed in spreadsheet files;
  • takes into account complex peptide/protein separations, (SCX, SDS-PAGE, …);
  • implements two different LC-MS run alignment methods : the OBI-Warp alignment method based on MS level one data, and an MS level 2 based alignment method conceived in our team.