MassChroQ is cited 269 times Full list in scientific publications and cited in 3 patents.

Patents

US Patent & Trademark Office, 2017-05-02 : Becker C, Bern M, Kil YJ, Kim MT, Zhang B. Interactive analysis of mass spectrometry data. Protein Metrics Inc. (San Carlos, CA), 9640376 B1 (14/306020)
This invention relates to graphical user-interactive displays for use in MS-based analysis of protein impurities, as well as methods and software for generating and using such. One aspect provides a user-interactive display comprising an extracted mass chromatogram (XIC), an MS1 spectrum and an MS2 spectrum, all simultaneously representing a user-selected peptide. Another aspect provides a user interactive display simultaneously presenting paired spectra (XIC, MS1 and/or MS2) for a variant peptide and its corresponding wildtype counterpart.
US Patent & Trademark Office, 2014-11-27 : Bruce JE, Chavez J, Weisbrod C. Real-time analysis for cross-linked peptides. University of Washington (Seattle, WA), 9612246 B2 (14/283902)
Disclosed herein are methods for large-scale, high-throughput identification of protein-protein interactions and the topologies thereof under physiologically relevant conditions. In one aspect, the disclosure provides methods for identifying one or a plurality of interacting peptides within a biological system comprising obtaining a population of proteins cross-linked with a cleavable protein interaction reporter (PIR) cross-linker, cleaving the PIR crosslinker to produce released peptides and cleaved reporter ions, and analyzing the population of released peptides to identify interacting peptides. Also disclosed are methods for identifying candidate drug compounds, as well as methods of data processing and visualization of protein-protein interactions.
World Intellectual Property Organization, 2021-01-28 : Rautou PE, Boulanger-Robert C, Poisson J. Use of myeloperoxidase inhibitors for the treatment of cardiovascular diseases in patients suffering from myeloproliferative neoplasms. INSERM, APHP, Université de Paris, WO/2021/013942 (PCT/EP2020/070827)
Arterial cardiovascular events, i.e. the leading cause of death in patients with JAK2 V617F myeloproliferative neoplasms (MPN), are poorly understood. The inventors demonstrated that Jak2 V617F mice display a strong increase in arterial contraction with disturbed endothelial nitric oxide pathway and increased endothelial oxidative stress. This augmented arterial contraction was reproduced by circulating microvesicles isolated from patients carrying JAK2 V617F and by microvesicles derived from JAK2 V617F erythrocytes. Using proteomics, the inventors identified a high expression of myeloperoxidase in microvesicles derived from JAK2 V617F erythrocytes that could account for this effect. To assess the role of myeloperoxidase in this effect, the inventors then directly inhibited myeloperoxidase in microvesicles derived from Jak2 V617F erythrocytes and observed that it completely reversed the increase in endothelial oxidative stress induced by microvesicles derived from Jak2 V617F .The results prompt the inventors to conclude that JAK2 V617F MPN induce a potent increase in arterial contraction with increased endothelial oxidative stress, mediated by erythrocytes microvesicles and that myeloperoxidase (MPO) inhibitors would be suitable for preventing cardiovascular diseases in patient suffering from MPN.

Citations

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