This Java application, stores all your sequence databases in a single folder (repository). It offers :
This application can managed multiple repository.
The classical method for protein identification of LC-MS/MS data uses database searching and matching, as it is the case in Mascot, Sequest or X!Tandem softwares. However, these identifications are possible only if the protein being searched is present in the database. To address this problem the de novo interpretation strategy can be used instead. There exist softwares that use this strategy, but they are often difficult to use in a direct, automated way.
SpectrumFinder is a simple command line tool to compare a collection of reference spectrum to other spectrum from one or more mzXML files.
BEADS is a program for spot detection on 2-D gel images. It is based on an analogy with beads flowing uphill on the surface of the gel image and on the analysis of their paths.