.gitignore
.readthedocs.yml
CHANGELOG.md
CONTRIBUTING.rst
LICENSE
README.rst
pyproject.toml
setup.py
.github/workflows/publish.yml
.github/workflows/test.yml
.vscode/settings.json
docs/requirements.txt
docs/source/LICENSE.txt
docs/source/changelog.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/index.rst
docs/source/quickstart.rst
docs/source/_static/css/custom.css
docs/source/api/psm_utils.io.rst
docs/source/api/psm_utils.rst
docs/source/cli/cli.rst
example_files/1min_snippit_timscore.candidates.parquet
example_files/HeLa_1ug_isow2_1hgradient_datasetA_rep1_output_MSAmanda.csv.gz
example_files/PXD001077-Velos005137_swissprot-pfuriosus-canonical-crap_msgfplus-phospho.msgf.mzid.gz
example_files/PXD001077-Velos005137_swissprot-pfuriosus-canonical-crap_xtandem-refinement-phospho-ms2rescore.pout.gz
example_files/PXD001077-Velos005137_swissprot-pfuriosus-canonical-crap_xtandem-refinement-phospho.t.peprec.txt.gz
example_files/PXD001077-Velos005137_swissprot-pfuriosus-canonical-crap_xtandem-refinement-phospho.t.xml.gz
example_files/PXD001077-Velos005137_swissprot-pfuriosus-canonical-crap_xtandem-refinement-phospho.t.xml.tsv.gz
example_files/PXD035029-34339_x00530_AH_AH006c_DDA_1_head.pepXML.gz
example_files/PXD053286-G1_PTMiprophet.slice.pep.xml
example_files/QExHF04054_tandem.idXML.gz
example_files/alphadia.precursors.tsv
example_files/example.flashlfq.tsv
example_files/example.psm_utils.cbor
example_files/example.psm_utils.json
example_files/example.psm_utils.tsv
example_files/fragpipe.psm.tsv
example_files/msms.txt.gz
online/Home.py
online/README.md
online/_base.py
online/_utils.py
online/requirements.txt
online/.streamlit/config.toml
online/example_data/LFQ_Orbitrap_DDA_Ecoli_01_all.tsv
online/pages/1_PSM_file_statistics.py
online/pages/2_PSM_file_conversion.py
psm_utils/__init__.py
psm_utils/__main__.py
psm_utils/exceptions.py
psm_utils/peptidoform.py
psm_utils/psm.py
psm_utils/psm_list.py
psm_utils/utils.py
psm_utils.egg-info/PKG-INFO
psm_utils.egg-info/SOURCES.txt
psm_utils.egg-info/dependency_links.txt
psm_utils.egg-info/entry_points.txt
psm_utils.egg-info/requires.txt
psm_utils.egg-info/top_level.txt
psm_utils/io/__init__.py
psm_utils/io/_base_classes.py
psm_utils/io/_pd_msf_tables.py
psm_utils/io/_utils.py
psm_utils/io/alphadia.py
psm_utils/io/cbor.py
psm_utils/io/diann.py
psm_utils/io/exceptions.py
psm_utils/io/flashlfq.py
psm_utils/io/fragpipe.py
psm_utils/io/idxml.py
psm_utils/io/ionbot.py
psm_utils/io/json.py
psm_utils/io/maxquant.py
psm_utils/io/msamanda.py
psm_utils/io/mzid.py
psm_utils/io/parquet.py
psm_utils/io/peptide_record.py
psm_utils/io/pepxml.py
psm_utils/io/percolator.py
psm_utils/io/proteome_discoverer.py
psm_utils/io/proteoscape.py
psm_utils/io/sage.py
psm_utils/io/tsv.py
psm_utils/io/xtandem.py
tests/test_peptidoform.py
tests/test_psm.py
tests/test_psm_list.py
tests/test_data/ionbot.first.test.csv
tests/test_data/minimal_test.msf
tests/test_data/minimal_v79_test.msf
tests/test_data/peprec.csv
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tests/test_io/test_cbor.py
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tests/test_io/test_flashlfq.py
tests/test_io/test_fragpipe.py
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tests/test_io/test_maxquant.py
tests/test_io/test_msamanda.py
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tests/test_io/test_parquet.py
tests/test_io/test_peptide_record.py
tests/test_io/test_pepxml.py
tests/test_io/test_percolator.py
tests/test_io/test_proteome_discoverer.py
tests/test_io/test_proteoscape.py
tests/test_io/test_sage.py
tests/test_io/test_tsv.py
tests/test_io/test_xtandem.py