click<9,>=7
lxml<7,>=4
ms2rescore-rs<2,>=0.5.0
numpy<3,>=1.25
pandas[feather]<3,>=1
psm_utils<4,>=1.5
pydantic<3,>=2
pyteomics<5,>=3.5
rich<16,>=13
sqlalchemy<3,>=1.4
werkzeug<4,>=2
xgboost<3,>=1.3

[im]
im2deep<3,>=2.0.0

[plotting]
matplotlib>=3.0
spectrum-utils>=0.5

[rt]
deeplc<5,>=4.0.0b1
