
olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env$ cat init/init_iterative.txt 

###################### Directories ###########################
# directory with contains the mzXML
spectra_d="/gorgone/pappso/moulon/users/Ariane/Proteocardis/link_mzXML_by_dataset/Samples_ALL_Env_baria"
# directory with contains the model for identification
models_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/presets"
# directory which contains the databases to interrogate
database_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database"
# directories which will be created to stores the results
params_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/params"
output_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run"

#################### Files and values #######################
# Job name ; write a tag for your job
job_name="60_baria_env"
# tandem executable
tandem_bin="/usr/bin/tandem"
# HTCondor nrequest_memory
request_memory=80000
# HTCondor request_cpus
request_cpus=15

# Databases to use (MUST be in the database directory)
human_f="uniprot-human-20211006.fasta"
conta_f="contaminants_standards.fasta"
metahit_f="meta_total.fasta"
# File in which is written the files to analyse
list_samples_path="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/list_samples.txt"
# Outputs to track your job ; write whatever you want
stdout="stdout_60_baria_env.txt"
stderr="stderr_60_baria_env.txt"
# evalue threshold to use
evalue="0.05"
# models to use (MUST be in the models directory)
model_first_f="Lumos_04112019_PROTEOCARDIS_FIRST_STEP_AB.xml"
model_second_f="Lumos_04112019_PROTEOCARDIS_SECOND_STEP_AB.xml"
model_third_f="Lumos_04112019_PROTEOCARDIS_THIRD_STEP_AB.xml"


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env$ rm -rf metapappso_condor/*



olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env$ metapappso_iterative_identification_htcondor_step_1.sh init/init_iterative.txt 
Launching iterative identification identification lundi 11 octobre 2021, 13:21:43 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run param=
lundi 11 octobre 2021, 13:21:44 (UTC+0200) First step of identification is over
Submitting job(s)............................................................
60 job(s) submitted to cluster 1972.


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env$ condor_q 1972


-- Schedd: proteus1 : <192.168.1.101:9618?... @ 10/12/21 09:32:48
OWNER BATCH_NAME      SUBMITTED   DONE   RUN    IDLE   HOLD  TOTAL JOB_IDS

0 jobs; 0 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended



olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env$  metapappso_iterative_identification_htcondor_step_2.sh init/init_iterative.txt 
Launching iterative identification identification mardi 12 octobre 2021, 09:35:04 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run param=
mardi 12 octobre 2021, 09:35:04 (UTC+0200) Creation of specific databases
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/011_20MC0351_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/011_20MC0351_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/019_20MC0081_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/019_20MC0081_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/025_20MC0081_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/025_20MC0081_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/031_20MC0351_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/031_20MC0351_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/047_20MC0324_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/047_20MC0324_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/053_20MC0071_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/053_20MC0071_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/067_20MC0324_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/067_20MC0324_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/079_20MC0071_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/079_20MC0071_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/095_20MC0329_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/095_20MC0329_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/101_20MC0019_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/101_20MC0019_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/123_20MC0019_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/123_20MC0019_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/133_20MC0329_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/133_20MC0329_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/145_20MC0050_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/145_20MC0050_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/147_20MC0037_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/147_20MC0037_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/153_20MC0207_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/153_20MC0207_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/161_20MC0037_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/161_20MC0037_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/163_20MC0050_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/163_20MC0050_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/167_20MC0207_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/167_20MC0207_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/183_20MC0115_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/183_20MC0115_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/191_20MC0007_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/191_20MC0007_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/221_20MC0115_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/221_20MC0115_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/225_20MC0007_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/225_20MC0007_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/247_20MC0040_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/247_20MC0040_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/251_20MC0109_1_Env_first_step_60_baria_env.xml
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('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/251_20MC0109_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/257_20MC0109_6_Env_first_step_60_baria_env.xml
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('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/257_20MC0109_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/267_20MC0040_1_Env_first_step_60_baria_env.xml
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('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/267_20MC0040_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/279_20MC0002_1_Env_first_step_60_baria_env.xml
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('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/279_20MC0002_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/283_20MC0347_1_Env_first_step_60_baria_env.xml
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('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/283_20MC0347_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/291_20MC0200_1_Env_first_step_60_baria_env.xml
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('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/291_20MC0200_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/295_20MC0200_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/295_20MC0200_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/297_20MC0002_6_Env_first_step_60_baria_env.xml
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('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/297_20MC0002_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/299_20MC0347_6_Env_first_step_60_baria_env.xml
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('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/299_20MC0347_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/315_20MC0034_1_Env_first_step_60_baria_env.xml
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('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/315_20MC0034_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/329_20MC0297_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/329_20MC0297_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/331_20MC0034_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/331_20MC0034_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/343_20MC0297_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/343_20MC0297_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/381_20MC0017_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/381_20MC0017_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/383_20MC0017_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/383_20MC0017_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/389_20MC0235_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/389_20MC0235_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/399_20MC0235_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/399_20MC0235_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/419_20MC0147_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/419_20MC0147_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/435_20MC0039_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/435_20MC0039_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/437_20MC0039_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/437_20MC0039_1_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/439_20MC0147_6_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/467_20MC0306_1_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/469_20MC0038_6_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/471_20MC0306_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/475_20MC0038_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/475_20MC0038_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/511_20MC0117_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/511_20MC0117_1_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/515_20MC0199_1_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/527_20MC0117_6_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/531_20MC0199_6_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/555_20MC0344_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/555_20MC0344_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/557_20MC0344_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/557_20MC0344_6_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/575_20MC0379_1_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/581_20MC0379_6_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/605_20MC0113_6_Env_metaproteome_60_baria_env.fasta', ' written')
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/609_20MC0113_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/619_20MC0091_1_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/619_20MC0091_1_Env_metaproteome_60_baria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/631_20MC0091_6_Env_first_step_60_baria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/631_20MC0091_6_Env_metaproteome_60_baria_env.fasta', ' written')
mardi 12 octobre 2021, 11:19:09 (UTC+0200) Specific databases have been created
mardi 12 octobre 2021, 11:19:09 (UTC+0200) Second step of identification starts
mardi 12 octobre 2021, 11:19:09 (UTC+0200) Second step of identification is over
Submitting job(s)............................................................
60 job(s) submitted to cluster 1984.



olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env$ condor_q 1984


-- Schedd: proteus1 : <192.168.1.101:9618?... @ 10/13/21 08:45:11
OWNER BATCH_NAME      SUBMITTED   DONE   RUN    IDLE   HOLD  TOTAL JOB_IDS

0 jobs; 0 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended





olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env$ metapappso_iterative_identification_htcondor_step_3.sh init/init_iterative.txt 
Launching iterative identification identification mercredi 13 octobre 2021, 08:45:52 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run param=
mercredi 13 octobre 2021, 08:45:52 (UTC+0200) Reading files and creation of combined database
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/011_20MC0351_1_Env_second_step_60_baria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/019_20MC0081_1_Env_second_step_60_baria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/025_20MC0081_6_Env_second_step_60_baria_env.xml
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Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/047_20MC0324_1_Env_second_step_60_baria_env.xml
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('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/combined_proteome_60_baria_env.fasta', ' written')
mercredi 13 octobre 2021, 09:49:56 (UTC+0200) Combined database has been created
mercredi 13 octobre 2021, 09:49:56 (UTC+0200) Third step of identification starts
mercredi 13 octobre 2021, 09:49:56 (UTC+0200) Third step of identification is over
Submitting job(s)............................................................
60 job(s) submitted to cluster 1989.

olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env$ condor_q 1989


-- Schedd: proteus1 : <192.168.1.101:9618?... @ 10/14/21 09:05:46
OWNER BATCH_NAME      SUBMITTED   DONE   RUN    IDLE   HOLD  TOTAL JOB_IDS

0 jobs; 0 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env$ metapappso_iterative_identification_htcondor_step_4.sh init/init_iterative.txt 
Launching iterative identification identification jeudi 14 octobre 2021, 09:08:14 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run param=
jeudi 14 octobre 2021, 09:08:14 (UTC+0200) All identifications are over, start reading results
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env/metapappso_condor/test_run/011_20MC0351_1_Env_third_step_60_baria_env.xml


removing non informative on a single group (13706 on 13711)
removing non informative on a single group (13707 on 13711)
removing non informative on a single group (13708 on 13711)
removing non informative on a single group (13709 on 13711)
removing non informative on a single group (13710 on 13711)
removing non informative on a single group (13711 on 13711)
removing non informative subgroups finished, remaining 16110 groups
numbering 16110 groups
grouping finished
End group creation : 
Begin Export
Finish Export
Unknown option 'o'.
jeudi 14 octobre 2021, 16:07:28 (UTC+0200) Read and grouping are over

olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/60_baria_env$ gp-fdr-peptide -i metapappso_condor/test_run/combined_third_step_60_baria_env_read.xml > metapappso_condor/test_run/FDR_60_baria_env.txt
