olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env$ cat init/init_iterative.txt 

###################### Directories ###########################
# directory with contains the mzXML
spectra_d="/gorgone/pappso/moulon/users/Ariane/Proteocardis/link_mzXML_by_dataset/Samples_ALL_Env/"
# directory with contains the model for identification
models_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/presets"
# directory which contains the databases to interrogate
database_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database"
# directories which will be created to stores the results
params_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/params"
output_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run"

#################### Files and values #######################
# Job name ; write a tag for your job
job_name="30_ctrl_nonbaria_env"
# tandem executable
tandem_bin="/usr/bin/tandem"
# HTCondor nrequest_memory
request_memory=80000
# HTCondor request_cpus
request_cpus=15

# Databases to use (MUST be in the database directory)
human_f="uniprot-human-20211006.fasta"
conta_f="contaminants_standards.fasta"
metahit_f="meta_total.fasta"
# File in which is written the files to analyse
list_samples_path="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/list_samples.txt"
# Outputs to track your job ; write whatever you want
stdout="stdout_30_ctrl_nonbaria_env.txt"
stderr="stderr_30_ctrl_nonbaria_env.txt"
# evalue threshold to use
evalue="0.05"
# models to use (MUST be in the models directory)
model_first_f="Lumos_04112019_PROTEOCARDIS_FIRST_STEP_AB.xml"
model_second_f="Lumos_04112019_PROTEOCARDIS_SECOND_STEP_AB.xml"
model_third_f="Lumos_04112019_PROTEOCARDIS_THIRD_STEP_AB.xml"



olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env$ rm -rf metapappso_condor/*


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env$ metapappso_iterative_identification_htcondor_step_1.sh init/init_iterative.txt
Launching iterative identification identification lundi 11 octobre 2021, 13:23:34 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run param=
lundi 11 octobre 2021, 13:23:34 (UTC+0200) First step of identification is over
Submitting job(s)..............................
30 job(s) submitted to cluster 1974.


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env$ condor_q 1974


-- Schedd: proteus1 : <192.168.1.101:9618?... @ 10/13/21 08:40:56
OWNER BATCH_NAME      SUBMITTED   DONE   RUN    IDLE   HOLD  TOTAL JOB_IDS

0 jobs; 0 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended






olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env$ metapappso_iterative_identification_htcondor_step_2.sh init/init_iterative.txt 
Launching iterative identification identification mercredi 13 octobre 2021, 08:41:22 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run param=
mercredi 13 octobre 2021, 08:41:22 (UTC+0200) Creation of specific databases
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/021_14MC0900_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/021_14MC0900_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/151_14MC0941_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/151_14MC0941_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/493_14MC0986_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/493_14MC0986_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/033_14MC0981_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/033_14MC0981_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/057_14MC0953_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/057_14MC0953_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/059_14MC0984_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/059_14MC0984_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/107_14MC0989_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/107_14MC0989_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/149_14MC0983_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/149_14MC0983_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/155_14MC0912_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/155_14MC0912_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/211_14MC0915_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/211_14MC0915_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/219_14MC0964_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/219_14MC0964_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/249_14MC0956_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/249_14MC0956_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/261_14MC0927_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/261_14MC0927_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/303_14MC0942_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/303_14MC0942_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/345_14MC0985_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/345_14MC0985_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/347_14MC0918_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/347_14MC0918_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/353_14MC0925_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/353_14MC0925_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/357_14MC0943_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/357_14MC0943_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/377_14MC0931_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/377_14MC0931_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/393_14MC0946_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/393_14MC0946_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/405_14MC0944_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/405_14MC0944_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/421_14MC0932_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/421_14MC0932_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/445_14MC0948_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/445_14MC0948_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/477_14MC0968_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/477_14MC0968_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/533_14MC0975_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/533_14MC0975_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/535_14MC0954_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/535_14MC0954_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/545_14MC0990_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/545_14MC0990_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/573_14MC0930_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/573_14MC0930_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/597_14MC0977_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/597_14MC0977_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/633_14MC0978_0_Env_first_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/633_14MC0978_0_Env_metaproteome_30_ctrl_nonbaria_env.fasta', ' written')
mercredi 13 octobre 2021, 09:36:17 (UTC+0200) Specific databases have been created
mercredi 13 octobre 2021, 09:36:17 (UTC+0200) Second step of identification starts
mercredi 13 octobre 2021, 09:36:17 (UTC+0200) Second step of identification is over
Submitting job(s)..............................
30 job(s) submitted to cluster 1987.


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env$ condor_q 1987


-- Schedd: proteus1 : <192.168.1.101:9618?... @ 10/13/21 11:03:08
OWNER BATCH_NAME      SUBMITTED   DONE   RUN    IDLE   HOLD  TOTAL JOB_IDS

0 jobs; 0 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env$ metapappso_iterative_identification_htcondor_step_3.sh init/init_iterative.txt 
Launching iterative identification identification mercredi 13 octobre 2021, 11:04:36 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run param=
mercredi 13 octobre 2021, 11:04:36 (UTC+0200) Reading files and creation of combined database
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/021_14MC0900_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/033_14MC0981_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/057_14MC0953_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/059_14MC0984_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/107_14MC0989_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/149_14MC0983_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/151_14MC0941_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/155_14MC0912_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/211_14MC0915_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/219_14MC0964_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/249_14MC0956_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/261_14MC0927_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/303_14MC0942_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/345_14MC0985_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/347_14MC0918_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/353_14MC0925_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/357_14MC0943_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/377_14MC0931_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/393_14MC0946_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/405_14MC0944_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/421_14MC0932_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/445_14MC0948_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/477_14MC0968_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/493_14MC0986_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/533_14MC0975_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/535_14MC0954_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/545_14MC0990_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/573_14MC0930_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/597_14MC0977_0_Env_second_step_30_ctrl_nonbaria_env.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/633_14MC0978_0_Env_second_step_30_ctrl_nonbaria_env.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/combined_proteome_30_ctrl_nonbaria_env.fasta', ' written')
mercredi 13 octobre 2021, 11:40:12 (UTC+0200) Combined database has been created
mercredi 13 octobre 2021, 11:40:12 (UTC+0200) Third step of identification starts
mercredi 13 octobre 2021, 11:40:12 (UTC+0200) Third step of identification is over
Submitting job(s)..............................
30 job(s) submitted to cluster 1993.


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env$ condor_q 1993


-- Schedd: proteus1 : <192.168.1.101:9618?... @ 10/14/21 16:59:22
OWNER BATCH_NAME      SUBMITTED   DONE   RUN    IDLE   HOLD  TOTAL JOB_IDS

0 jobs; 0 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env$ metapappso_iterative_identification_htcondor_step_4.sh init/init_iterative.txt 
Launching iterative identification identification jeudi 14 octobre 2021, 16:59:49 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run param=
jeudi 14 octobre 2021, 16:59:49 (UTC+0200) All identifications are over, start reading results
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_env/metapappso_condor/test_run/021_14MC0900_0_Env_third_step_30_ctrl_nonbaria_env.xml

removing non informative on a single group (9424 on 9429)
removing non informative on a single group (9425 on 9429)
removing non informative on a single group (9426 on 9429)
removing non informative on a single group (9427 on 9429)
removing non informative on a single group (9428 on 9429)
removing non informative on a single group (9429 on 9429)
removing non informative subgroups finished, remaining 11061 groups
numbering 11061 groups
grouping finished
End group creation : 
Begin Export
Finish Export
Unknown option 'o'.
jeudi 14 octobre 2021, 20:53:59 (UTC+0200) Read and grouping are over


