
olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ cat init/init_iterative.txt 

###################### Directories ###########################
# directory with contains the mzXML
spectra_d="/gorgone/pappso/moulon/users/Ariane/Proteocardis/link_mzXML_by_dataset/Samples_ALL"
# directory with contains the model for identification
models_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/presets"
# directory which contains the databases to interrogate
database_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database"
# directories which will be created to stores the results
params_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/params"
output_d="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run"

#################### Files and values #######################
# Job name ; write a tag for your job
job_name="30_ctrl_nonbaria_cyt"
# tandem executable
tandem_bin="/usr/bin/tandem"
# HTCondor nrequest_memory
request_memory=80000
# HTCondor request_cpus
request_cpus=15

# Databases to use (MUST be in the database directory)
human_f="uniprot-human-20211006.fasta"
conta_f="contaminants_standards.fasta"
metahit_f="meta_total.fasta"
# File in which is written the files to analyse
list_samples_path="/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/list_samples.txt"
# Outputs to track your job ; write whatever you want
stdout="stdout_30_ctrl_nonbaria_cyt.txt"
stderr="stderr_30_ctrl_nonbaria_cyt.txt"
# evalue threshold to use
evalue="0.05"
# models to use (MUST be in the models directory)
model_first_f="Lumos_04112019_PROTEOCARDIS_FIRST_STEP_AB.xml"
model_second_f="Lumos_04112019_PROTEOCARDIS_SECOND_STEP_AB.xml"
model_third_f="Lumos_04112019_PROTEOCARDIS_THIRD_STEP_AB.xml"

*******************

olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ rm -rf metapappso_condor/*



olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ metapappso_iterative_identification_htcondor_step_1.sh init/init_iterative.txt
Launching iterative identification identification lundi 11 octobre 2021, 13:24:31 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run param=
lundi 11 octobre 2021, 13:24:31 (UTC+0200) First step of identification is over
Submitting job(s)..............................
30 job(s) submitted to cluster 1975.



olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ condor_q 1975


-- Schedd: proteus1 : <192.168.1.101:9618?... @ 10/13/21 08:42:09
OWNER BATCH_NAME      SUBMITTED   DONE   RUN    IDLE   HOLD  TOTAL JOB_IDS

0 jobs; 0 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended







olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ metapappso_iterative_identification_htcondor_step_2.sh init/init_iterative.txt 
Launching iterative identification identification mercredi 13 octobre 2021, 08:42:34 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run param=
mercredi 13 octobre 2021, 08:42:34 (UTC+0200) Creation of specific databases
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/012_14MC0983_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/012_14MC0983_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/018_14MC0941_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/018_14MC0941_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/032_14MC0912_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/032_14MC0912_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/049_14MC0981_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/049_14MC0981_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/059_14MC0900_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/059_14MC0900_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/499_14MC0986_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/499_14MC0986_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/123_14MC0989_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/123_14MC0989_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/141_14MC0953_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/141_14MC0953_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/153_14MC0984_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/153_14MC0984_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/211_14MC0942_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/211_14MC0942_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/225_14MC0943_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/225_14MC0943_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/227_14MC0925_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/227_14MC0925_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/229_14MC0985_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/229_14MC0985_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/237_14MC0918_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/237_14MC0918_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/279_14MC0927_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/279_14MC0927_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/283_14MC0956_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/283_14MC0956_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/323_14MC0964_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/323_14MC0964_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/345_14MC0915_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/345_14MC0915_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/375_14MC0948_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/375_14MC0948_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/377_14MC0932_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/377_14MC0932_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/433_14MC0968_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/433_14MC0968_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/449_14MC0944_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/449_14MC0944_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/453_14MC0931_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/453_14MC0931_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/489_14MC0946_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/489_14MC0946_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/521_14MC0975_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/521_14MC0975_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/525_14MC0990_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/525_14MC0990_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/531_14MC0954_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/531_14MC0954_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/557_14MC0977_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/557_14MC0977_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/581_14MC0930_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/581_14MC0930_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/603_14MC0978_0_Cyt_first_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/603_14MC0978_0_Cyt_metaproteome_30_ctrl_nonbaria_cyt.fasta', ' written')
mercredi 13 octobre 2021, 09:46:53 (UTC+0200) Specific databases have been created
mercredi 13 octobre 2021, 09:46:53 (UTC+0200) Second step of identification starts
mercredi 13 octobre 2021, 09:46:53 (UTC+0200) Second step of identification is over
Submitting job(s)..............................
30 job(s) submitted to cluster 1988.



olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ condor_q 1988


-- Schedd: proteus1 : <192.168.1.101:9618?... @ 10/13/21 11:06:10
OWNER BATCH_NAME      SUBMITTED   DONE   RUN    IDLE   HOLD  TOTAL JOB_IDS

0 jobs; 0 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ metapappso_iterative_identification_htcondor_step_3.sh init/init_iterative.txt 
Launching iterative identification identification mercredi 13 octobre 2021, 11:06:43 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run param=
mercredi 13 octobre 2021, 11:06:43 (UTC+0200) Reading files and creation of combined database
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/012_14MC0983_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/018_14MC0941_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/032_14MC0912_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/049_14MC0981_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/059_14MC0900_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/123_14MC0989_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/141_14MC0953_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/153_14MC0984_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/211_14MC0942_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/225_14MC0943_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/227_14MC0925_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/229_14MC0985_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/237_14MC0918_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/279_14MC0927_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/283_14MC0956_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/323_14MC0964_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/345_14MC0915_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/375_14MC0948_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/377_14MC0932_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/433_14MC0968_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/449_14MC0944_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/453_14MC0931_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/489_14MC0946_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/499_14MC0986_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/521_14MC0975_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/525_14MC0990_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/531_14MC0954_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/557_14MC0977_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/581_14MC0930_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/603_14MC0978_0_Cyt_second_step_30_ctrl_nonbaria_cyt.xml
('Searching in ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/softs/database/meta_total.fasta')
('File ', '/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/combined_proteome_30_ctrl_nonbaria_cyt.fasta', ' written')
mercredi 13 octobre 2021, 11:53:02 (UTC+0200) Combined database has been created
mercredi 13 octobre 2021, 11:53:02 (UTC+0200) Third step of identification starts
mercredi 13 octobre 2021, 11:53:02 (UTC+0200) Third step of identification is over
Submitting job(s)..............................
30 job(s) submitted to cluster 1994.

olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ metapappso_iterative_identification_htcondor_step_4.sh init/init_iterative.txt 
Launching iterative identification identification vendredi 15 octobre 2021, 11:26:09 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run param=
vendredi 15 octobre 2021, 11:26:09 (UTC+0200) All identifications are over, start reading results
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/012_14MC0983_0_Cyt_third_step_30_ctrl_nonbaria_cyt.xml


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ condor_q 1994


-- Schedd: proteus1 : <192.168.1.101:9618?... @ 10/15/21 11:25:34
OWNER BATCH_NAME      SUBMITTED   DONE   RUN    IDLE   HOLD  TOTAL JOB_IDS

0 jobs; 0 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended


olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ metapappso_iterative_identification_htcondor_step_4.sh init/init_iterative.txt 
Launching iterative identification identification vendredi 15 octobre 2021, 11:26:09 (UTC+0200) output=/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run param=
vendredi 15 octobre 2021, 11:26:09 (UTC+0200) All identifications are over, start reading results
Read files : /gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt/metapappso_condor/test_run/012_14MC0983_0_Cyt_third_step_30_ctrl_nonbaria_cyt.xml

removing non informative on a single group (8107 on 8139)
removing non informative on a single group (8108 on 8139)
removing non informative on a single group (8109 on 8139)
removing non informative on a single group (8110 on 8139)
removing non informative on a single group (8111 on 8139)
removing non informative on a single group (8112 on 8139)
removing non informative on a single group (8113 on 8139)
removing non informative on a single group (8114 on 8139)
removing non informative on a single group (8115 on 8139)
removing non informative on a single group (8116 on 8139)
removing non informative on a single group (8117 on 8139)
removing non informative on a single group (8118 on 8139)
removing non informative on a single group (8119 on 8139)
removing non informative on a single group (8120 on 8139)
removing non informative on a single group (8121 on 8139)
removing non informative on a single group (8122 on 8139)
removing non informative on a single group (8123 on 8139)
removing non informative on a single group (8124 on 8139)
removing non informative on a single group (8125 on 8139)
removing non informative on a single group (8126 on 8139)
removing non informative on a single group (8127 on 8139)
removing non informative on a single group (8128 on 8139)
removing non informative on a single group (8129 on 8139)
removing non informative on a single group (8130 on 8139)
removing non informative on a single group (8131 on 8139)
removing non informative on a single group (8132 on 8139)
removing non informative on a single group (8133 on 8139)
removing non informative on a single group (8134 on 8139)
removing non informative on a single group (8135 on 8139)
removing non informative on a single group (8136 on 8139)
removing non informative on a single group (8137 on 8139)
removing non informative on a single group (8138 on 8139)
removing non informative on a single group (8139 on 8139)
removing non informative subgroups finished, remaining 9842 groups
numbering 9842 groups
grouping finished
End group creation : 
Begin Export
Finish Export
Unknown option 'o'.
vendredi 15 octobre 2021, 18:26:18 (UTC+0200) Read and grouping are over

olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ gp-fdr-peptide -i metapappso_condor/test_run/combined_third_step_30_ctrl_nonbaria_cyt_read.xml > metapappso_condor/test_run/FDR_30_ctrl_nonbaria_cyt.txt

olangella@proteus1:/gorgone/pappso/moulon/users/Olivier/proteocardis/new_identification/30_ctrl_nonbaria_cyt$ cat metapappso_condor/test_run/FDR_30_ctrl_nonbaria_cyt.txt
target psms	1.23355e+06
decoy psms	2246
FDR	0.00182077	(0.182077%)
