spomsspectrum.h File Reference

SpecPeptidOMS Spectrum. More...

#include <cstdint>
#include "../../massspectrum/qualifiedmassspectrum.h"
#include "../specglob/experimentalspectrum.h"
#include "../../amino_acid/aacode.h"

Go to the source code of this file.

Classes
struct	pappso::specpeptidoms::AaPosition
class	pappso::specpeptidoms::SpOMSSpectrum

Namespaces
namespace	pappso
	tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multicharge peaks to monocharge
namespace	pappso::specpeptidoms

Typedefs
typedef std::shared_ptr< const SpOMSSpectrum >	pappso::specpeptidoms::SpOMSSpectrumCsp

Detailed Description

SpecPeptidOMS Spectrum.

Date

24/03/2025

Author

Aurélien Berthier

C++ implementation of the SpecPeptidOMS algorithm described in : (1) Benoist, É.; Jean, G.; Rogniaux, H.; Fertin, G.; Tessier, D. SpecPeptidOMS Directly and Rapidly Aligns Mass Spectra on Whole Proteomes and Identifies Peptides That Are Not Necessarily Tryptic: Implications for Peptidomics. J. Proteome Res. 2025. https://doi.org/10.1021/acs.jproteome.4c00870.

Definition in file spomsspectrum.h.