scenario.h File Reference

backtracking of 2nd alignment More...

#include <cstddef>
#include <vector>
#include "types.h"

Go to the source code of this file.

Classes
struct	pappso::specpeptidoms::ScenarioCell
class	pappso::specpeptidoms::Scenario

Namespaces
namespace	pappso
	tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multicharge peaks to monocharge
namespace	pappso::specpeptidoms

Detailed Description

backtracking of 2nd alignment

Date

24/03/2025

Author

Aurélien Berthier

C++ implementation of the SpecPeptidOMS algorithm described in : (1) Benoist, É.; Jean, G.; Rogniaux, H.; Fertin, G.; Tessier, D. SpecPeptidOMS Directly and Rapidly Aligns Mass Spectra on Whole Proteomes and Identifies Peptides That Are Not Necessarily Tryptic: Implications for Peptidomics. J. Proteome Res. 2025. https://doi.org/10.1021/acs.jproteome.4c00870.

Definition in file scenario.h.