libpappsomspp
Library for mass spectrometry
- p -
PappsoException() :
pappso::PappsoException
parameterMapReady() :
pappso::cbor::psm::PsmCbor2Json
,
pappso::cbor::psm::PsmFeatures
,
pappso::cbor::psm::PsmFileAppend
,
pappso::cbor::psm::PsmFileReaderBase
,
pappso::cbor::psm::PsmFileScanProcessAndCopy
,
pappso::cbor::psm::PsmNewEval
,
pappso::cbor::psm::PsmSpecGlob
,
pappso::cbor::psm::PsmSpecPeptidOms
parse() :
pappso::FastaReader
,
pappso::OboPsiMod
,
pappso::OboPsiMs
,
pappso::OboUnimod
parseDefinitionLabel() :
pappso::OboTermForm
parseFastaFile() :
pappso::FastaFileIndexer
parseFixedModification() :
pappso::PeptideModificatorPipeline
parseLabeledModification() :
pappso::PeptideModificatorPipeline
parseLine() :
pappso::OboPsiModTerm
parseMassSpectrumLine() :
pappso::BafAsciiMsRunReader
parseMsRunFilename() :
pappso::cbor::psm::SageTsvHandler
parseNoConstString() :
pappso::PeptideProFormaParser
,
pappso::PeptideStrParser
parseOnlyOne() :
pappso::FastaReader
parsePeptide() :
pappso::cbor::psm::SageTsvHandler
parsePotentialModification() :
pappso::PeptideModificatorPipeline
parseProteins() :
pappso::cbor::psm::SageTsvHandler
parseSpectrumStringId() :
pappso::cbor::psm::SageTsvHandler
parseString() :
pappso::PeptideProFormaParser
,
pappso::PeptideStrParser
parseStringToPeptide() :
pappso::PeptideProFormaParser
,
pappso::PeptideStrParser
peakChanged() :
pappso::MassSpectrumWidget
peakChangeEvent() :
pappso::MassSpectrumWidget
PeakIonIsotopeMatch() :
pappso::PeakIonIsotopeMatch
PeakIonMatch() :
pappso::PeakIonMatch
peakType() :
pappso::specpeptidoms::SpOMSSpectrum
Peptide() :
pappso::masschroq::Peptide
,
pappso::Peptide
peptideAnnotate() :
pappso::MassSpectrumWidget
PeptideBase() :
pappso::masschroq::PeptideBase
PeptideBuilder() :
pappso::PeptideBuilder
PeptideFixedModificationBuilder() :
pappso::PeptideFixedModificationBuilder
PeptideFragment() :
pappso::PeptideFragment
PeptideFragmentIon() :
pappso::PeptideFragmentIon
PeptideFragmentIonListBase() :
pappso::PeptideFragmentIonListBase
PeptideIsotopeSpectrumMatch() :
pappso::PeptideIsotopeSpectrumMatch
PeptideLabel() :
pappso::masschroq::PeptideLabel
peptideListSize() :
pappso::GrpSubGroup
PeptideMeasurements() :
pappso::masschroq::PeptideMeasurements
PeptideMeasurementsBase() :
pappso::masschroq::PeptideMeasurementsBase
PeptideMethioninRemove() :
pappso::PeptideMethioninRemove
PeptideModel() :
pappso::specglob::PeptideModel
PeptideModificatorBase() :
pappso::PeptideModificatorBase
PeptideModificatorPipeline() :
pappso::PeptideModificatorPipeline
PeptideModificatorTee() :
pappso::PeptideModificatorTee
PeptideNaturalIsotope() :
pappso::PeptideNaturalIsotope
PeptideNaturalIsotopeAverage() :
pappso::PeptideNaturalIsotopeAverage
PeptideNaturalIsotopeList() :
pappso::PeptideNaturalIsotopeList
PeptideObservation() :
pappso::masschroq::PeptideObservation
PeptideRawFragmentMasses() :
pappso::PeptideRawFragmentMasses
PeptideSemiEnzyme() :
pappso::PeptideSemiEnzyme
PeptideSizeFilter() :
pappso::PeptideSizeFilter
PeptideSpectrum() :
pappso::specglob::PeptideSpectrum
PeptideSpectrumMatch() :
pappso::PeptideSpectrumMatch
PeptideVariableModificationBuilder() :
pappso::PeptideVariableModificationBuilder
PeptideVariableModificationReplacement() :
pappso::PeptideVariableModificationReplacement
perfectShiftPossible() :
pappso::specpeptidoms::SemiGlobalAlignment
perfectShiftPossibleEnd() :
pappso::specpeptidoms::SemiGlobalAlignment
perfectShiftPossibleFrom0() :
pappso::specpeptidoms::SemiGlobalAlignment
plot() :
pappso::MassSpectrumWidget
,
pappso::XicWidget
plotRangesChangedSignal() :
pappso::BasePlotWidget
plottableDestructionRequestedSignal() :
pappso::BasePlotWidget
plottableSelectionChangedSignal() :
pappso::BasePlotWidget
pointerToString() :
pappso::Utils
populateIonMobilityGrid() :
pappso::masschroq::Peptide
postExtractionProcess() :
pappso::MsRunXicExtractorInterface
postProcessingAlign() :
pappso::specpeptidoms::SemiGlobalAlignment
PostTreatment() :
pappso::specglob::PostTreatment
PpmPrecision() :
pappso::PpmPrecision
preciseAlign() :
pappso::specpeptidoms::SemiGlobalAlignment
PrecisionBase() :
pappso::PrecisionBase
precisionChanged() :
pappso::PrecisionWidget
PrecisionWidget() :
pappso::PrecisionWidget
Precursor() :
pappso::masschroq::Precursor
PrecursorIonData() :
pappso::PrecursorIonData
precursorIonNodesByPrecursorMz() :
pappso::MsRunDataSetTreeNode
precursorNodeByProductSpectrumIndex() :
pappso::MsRunDataSetTree
precursorNodesByPrecursorMz() :
pappso::MsRunDataSetTree
PrecursorParser() :
pappso::masschroq::PrecursorParser
prepareExtractor() :
pappso::MsRunXicExtractorDisk
prepareMeasurements() :
pappso::masschroq::MbrPeptideMeasurements
,
pappso::masschroq::PeptideMeasurements
prepareMeasurementsForPeptide() :
pappso::masschroq::PeptideMeasurementsBase
preprocessSpectrum() :
pappso::specpeptidoms::SpOMSSpectrum
printInfos() :
pappso::GrpMapPeptideToSubGroupSet
,
pappso::GrpPeptideSet
,
pappso::GrpSubGroupSet
privAddFixedModificationString() :
pappso::PeptideModificatorPipeline
privAddPotentialModificationString() :
pappso::PeptideModificatorPipeline
privContainsAll() :
pappso::GrpPeptideSet
privMatchIonList() :
pappso::PeptideSpectrumMatch
process() :
pappso::cbor::psm::CborScanMapBase
,
pappso::cbor::psm::PsmFeaturesScan
,
pappso::cbor::psm::PsmSpecGlobScan
,
pappso::cbor::psm::PsmSpecPeptidOmsScan
,
pappso::XtandemSpectrumProcess
process_group_note() :
pappso::WrapTandemResults
processBufferScan() :
pappso::cbor::psm::PsmFileScanProcess
processBufferScanDone() :
pappso::cbor::psm::PsmFileScanProcess
,
pappso::cbor::psm::PsmFileScanProcessAndCopy
processDriftTime() :
pappso::PwizMsRunReader
processRetentionTime() :
pappso::PwizMsRunReader
productNodesByPrecursorMz() :
pappso::MsRunDataSetTreeNode
productNodesByPrecursorSpectrumIndex() :
pappso::MsRunDataSetTree
ProjectParameters() :
pappso::ProjectParameters
protectedExtractXicCoordSPtrList() :
pappso::MsRunXicExtractor
,
pappso::MsRunXicExtractorDisk
,
pappso::MsRunXicExtractorInterface
,
pappso::TimsDirectXicExtractor
Protein() :
pappso::masschroq::Protein
,
pappso::Protein
ProteinIntegerCode() :
pappso::ProteinIntegerCode
proteinMapReady() :
pappso::cbor::psm::PsmFileReaderBase
,
pappso::cbor::psm::PsmFileScanProcessAndCopy
ProteinPeptideList() :
ProteinPeptideList
ProteinPresenceAbsenceMatrix() :
pappso::ProteinPresenceAbsenceMatrix
PsmCbor2Json() :
pappso::cbor::psm::PsmCbor2Json
PsmFeatures() :
pappso::cbor::psm::PsmFeatures
,
pappso::PsmFeatures
PsmFeaturesScan() :
pappso::cbor::psm::PsmFeaturesScan
PsmFileAppend() :
pappso::cbor::psm::PsmFileAppend
PsmFileReaderBase() :
pappso::cbor::psm::PsmFileReaderBase
PsmFileScanProcess() :
pappso::cbor::psm::PsmFileScanProcess
PsmFileScanProcessAndCopy() :
pappso::cbor::psm::PsmFileScanProcessAndCopy
PsmNewEval() :
pappso::cbor::psm::PsmNewEval
PsmProteinMap() :
pappso::cbor::psm::PsmProteinMap
psmReady() :
pappso::cbor::psm::PsmFileReaderBase
PsmSpecGlob() :
pappso::cbor::psm::PsmSpecGlob
PsmSpecGlobScan() :
pappso::cbor::psm::PsmSpecGlobScan
PsmSpecPeptidOms() :
pappso::cbor::psm::PsmSpecPeptidOms
PsmSpecPeptidOmsScan() :
pappso::cbor::psm::PsmSpecPeptidOmsScan
push_back() :
pappso::GrpProtein
,
pappso::spectree::Bucket
pushBackIonMasses() :
pappso::PeptideRawFragmentMasses
pushBackIonMz() :
pappso::PeptideRawFragmentMasses
pushBackMatchSpectrum() :
pappso::PeptideRawFragmentMasses
pushBackXicCoordList() :
pappso::masschroq::PeptideMeasurementsBase
PwizMsFileReader() :
pappso::PwizMsFileReader
PwizMsRunReader() :
pappso::PwizMsRunReader
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