Package: cutelee6-qt6 Source: cutelee Version: 6.1.0-5~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1991 Depends: libc6 (>= 2.32), libgcc-s1 (>= 3.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.1.2), libstdc++6 (>= 11) Multi-Arch: same Homepage: https://github.com/cutelyst/cutelee Priority: optional Section: libs Filename: pool/main/c/cutelee/cutelee6-qt6_6.1.0-5~trixie+1_amd64.deb Size: 472964 SHA256: 357e69a37d3d12aae2ded4fca72da3cf4d90f1e67cfebfc500f863f0063607eb SHA1: aa200f9779353437f61399fb905239a7e769669b MD5sum: 421bb051f2537d8e26279b5fa539f7f1 Description: Templating library for data-containing document generation (runtime files) The goal of Cutelee Templates is to make it easier for application developers to separate the structure of documents from the data they contain, opening the door for theming and advanced generation of other text such as code. . The syntax uses the syntax of the Django template system, and the core design of Django is reused in Cutelee. .

{{ athlete.name }}{% if athlete.isCaptain %} (C){% endif %}

{{ athlete.name }}{% if athlete.isCaptain %} (C){% endif %}

. Part of the design of both template systems is that application developers can extend the syntax by implementing their own tags and filters. For details of how to do that, see the API documentation. . This package ships the development files of the libcutelee shared library. Package: grouping-protein Version: 0.5.13-1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 974 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.21-1~trixie+1), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14), python3-biopython, libpappsomspp-core0 (>= 0.11.16) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/g/grouping-protein/grouping-protein_0.5.13-1_amd64.deb Size: 198964 SHA256: a704bb1c3b4a8fa6a7d02d524da2d9cf159bb5db42faabb10e39b47ab66988d0 SHA1: dda9a25b1ba40171096bc67776498d4c39653be4 MD5sum: 5ae2abd47057642c4c21cdcaf3a050ea Description: Proteomics grouping algorithm Grouping-protein implements a fast algorithm that can filter thousands of peptides Package: i2masschroq Version: 1.3.8-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 5257 Depends: tandemng, libodsstream0 (>= 0.9.14), qt6-svg-plugins, cutelee6-qt6 (>= 6.1.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.25-1~trixie+1), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6network6 (>= 6.1.2), libqt6printsupport6 (>= 6.1.2), libqt6widgets6 (>= 6.3.0), libqt6xml6 (>= 6.6.0), libstdc++6 (>= 14) Recommends: i2masschroq-tools Breaks: xtpcpp (<< 0.4.54) Replaces: xtpcpp (<< 0.4.54) Provides: xtpcpp (= 0.4.54) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/i/i2masschroq/i2masschroq_1.3.8-1~trixie1_amd64.deb Size: 1527404 SHA256: f8f00199b5fd2d913db30fb29e3fb457816c30503f9a0b80b15fb1f2ecdf8965 SHA1: 2f1470dc1f2a1b224e9caa48d0cb7b363fc334e5 MD5sum: 47b2bd9ea2a19f457342db999c62e88f Description: Successor of X!TandemPipeline The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export Package: i2masschroq-dbgsym Source: i2masschroq Version: 1.3.8-1~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 41591 Depends: i2masschroq (= 1.3.8-1~trixie1) Priority: optional Section: debug Filename: pool/main/i/i2masschroq/i2masschroq-dbgsym_1.3.8-1~trixie1_amd64.deb Size: 40471800 SHA256: a40896337cc0601aca7131d96297c728f1053baea297042c48e85f5cd2dffb23 SHA1: 4df6624178cd94b635fb8ba0f6e7b081010e7fe9 MD5sum: 69d5068a8ccc4b81184c0d14ed188fd4 Description: debug symbols for i2masschroq Build-Ids: 952cfa9a14030d23fd68d2df5a11baf574477511 Package: i2masschroq-tools Source: i2masschroq Version: 1.3.8-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 389 Depends: tandemng, libc6 (>= 2.34), libgcc-s1 (>= 12), libodsstream0 (>= 0.9.14), libpappsomspp-gui0 (>= 0.11.25-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Breaks: xtpcpp-tandemwrapper (<< 0.4.54), xtpcpp-tandemwrapper-dbgsym (<< 0.4.54), xtpcpp-tools (<< 0.4.54) Replaces: xtpcpp-tandemwrapper (<< 0.4.54), xtpcpp-tandemwrapper-dbgsym (<< 0.4.54), xtpcpp-tools (<< 0.4.54) Provides: xtpcpp-tools (= 0.4.54) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: science Filename: pool/main/i/i2masschroq/i2masschroq-tools_1.3.8-1~trixie1_amd64.deb Size: 117864 SHA256: c09bb18f60a980795547ab271f8efb8997934c1cd4a2dec0c477634351713d10 SHA1: acc3baa3b58c38dec8c9f13523ed5c97ff15f55f MD5sum: e1dce0ab66b2477ab6953bac8a2e50e4 Description: X!Tandem-related utilities for timsTOF pro and modern mzML data The programs allow one to perform the following tasks: . - Convert and store a (partial) copy of the initial mass spectrometry data files in the mzXML format that is required by X!Tandem; - Perform the conversion above and run i2masschroq on the obtained data files seamlessly. . This package ships two command line tools that are useful when mass data are available in a format that is not immediately consumable by X!Tandem (like mzML or Bruker timsTOF data). Package: i2masschroq-tools-dbgsym Source: i2masschroq Version: 1.3.8-1~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2642 Depends: i2masschroq-tools (= 1.3.8-1~trixie1) Priority: optional Section: debug Filename: pool/main/i/i2masschroq/i2masschroq-tools-dbgsym_1.3.8-1~trixie1_amd64.deb Size: 2561616 SHA256: 8bd002d6b746721bd0503695f09d8a70002683a69326fb78377d4b9f7947c6a2 SHA1: 3d8932eeee796af5b7052f0942b071bac1702033 MD5sum: 56a96349520549683c4e3bc32cac5aff Description: debug symbols for i2masschroq-tools Build-Ids: 6d0137f3c3039ddb1d2ddb3d3a564df36b0d6e25 a17230cdca21ff1000ffd163d00d90e5ab82a12b Package: libodsstream-dev Source: libodsstream Version: 0.9.19-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 680 Depends: libodsstream0 (= 0.9.19-1~trixie+1), qt6-base-dev, qt6-5compat-dev, zlib1g-dev, libquazip1-qt6-dev Breaks: libodsstream-qt5-dev (<< 0.7.9-1~) Replaces: libodsstream-qt5-dev (<< 0.7.9-1~) Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libo/libodsstream/libodsstream-dev_0.9.19-1~trixie+1_amd64.deb Size: 101212 SHA256: 7cf2f94ab1083f7d5cb92d7113fe185b5781d0e39de975a588bdb924f05fcfdf SHA1: 8fbe997f1fe9978b663b26bf2d6543c99e71c791 MD5sum: cdf6427d17dc7baa5f1b6071d658df3b Description: C++ library to read or write ODS files (development files) libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the header files of the library. Package: libodsstream-doc Source: libodsstream Version: 0.9.14-2~bookworm+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 4533 Multi-Arch: foreign Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: doc Filename: pool/main/libo/libodsstream/libodsstream-doc_0.9.14-2~bookworm+1_all.deb Size: 322992 SHA256: 8b5f444d757908336c09910d04c8a52f0912c5f99570950e12eff02fe2e58541 SHA1: e0ccc1deb923505c8626844c33eaca4763c6470e MD5sum: fd64388eb4aefddf740b0a501eaf7639 Description: doxygen documentation of the ODSstream library libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the developer documentation. Package: libodsstream0 Source: libodsstream Version: 0.9.19-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 251 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libquazip1-qt6-1t64 (>= 1.4), libstdc++6 (>= 14) Breaks: libodsstream-qt5-0 (<< 0.7.9-1~) Replaces: libodsstream-qt5-0 (<< 0.7.9-1~) Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libo/libodsstream/libodsstream0_0.9.19-1~trixie+1_amd64.deb Size: 77628 SHA256: 472efda7769681de18a91ac8f20b4b0335f135fb66256da49c8225d6cbfaa3f9 SHA1: 3b129277d1c6fa9f776e82d4c85c223d20be1d77 MD5sum: 8332cbfc5447ec566073ff384131b99b Description: C++ library to read or write ODS files libodsstream provides a simple way to read and write Open Document Spreadsheet files. The hight memory efficiency comes from the fact that only streams are used for the read/write operations. . This package contains the shared library. Package: libodsstream0-dbgsym Source: libodsstream Version: 0.9.19-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2460 Depends: libodsstream0 (= 0.9.19-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libo/libodsstream/libodsstream0-dbgsym_0.9.19-1~trixie+1_amd64.deb Size: 2460640 SHA256: f697a4c96d3d04b98a5efc40cef6bc190b47c4ed7b49ecfc08c6ad23e926622b SHA1: 8cb804359bf7b6abcee3b53d24855477e774e6fe MD5sum: b59d6b4541add0f74c033a5c6920b184 Description: debug symbols for libodsstream0 Build-Ids: edd182d15b4aa750a27e1459ae87926794ed415b Package: libpappsomspp-cli Source: libpappsomspp Version: 0.11.25-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 213 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.25-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14), libpappsomspp-core0 Recommends: libpappsomspp-doc Replaces: libpappsomspp-cli Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: science Filename: pool/main/libp/libpappsomspp/libpappsomspp-cli_0.11.25-1~trixie+1_amd64.deb Size: 54452 SHA256: fb582148056b6382853abe42444d92f86d3b0624535c54f4557892dc2584de2f SHA1: e6758c5ff8cd43a1dd5591f76fd36403ede3e494 MD5sum: e157288a73cf0537db151c3a17246507 Description: C++ library to handle mass spectrometry data (GUI development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships command line interface programs. Package: libpappsomspp-cli-dbgsym Source: libpappsomspp Version: 0.11.25-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1212 Depends: libpappsomspp-cli (= 0.11.25-1~trixie+1) Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-cli-dbgsym_0.11.25-1~trixie+1_amd64.deb Size: 1138560 SHA256: 0cda3f81016e5ca5e016a888c40055fb4442655bb98c6c273f5417cd892cd578 SHA1: 80dbd7a4935325a6aa5d301e55a7493169217c97 MD5sum: 35885bb6d6cfa5c93fecc2aa0dc9092d Description: debug symbols for libpappsomspp-cli Build-Ids: 7aeb82c89c0b09e4271ae083f377f6fc328470a3 c02bd411b6090a111d63e463d4f363a1edd2b11d d28857fea34a8345356a20d00269d29594e4ced8 df4e5af702ee18ae92ae54d96122f07ba9df7a8d Package: libpappsomspp-core-dev Source: libpappsomspp Version: 0.11.25-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 12277 Depends: libpappsomspp-core0 (= 0.11.25-1~trixie+1) Recommends: libpappsomspp-doc Replaces: libpappsomspp-dev Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libp/libpappsomspp/libpappsomspp-core-dev_0.11.25-1~trixie+1_amd64.deb Size: 1871844 SHA256: 514d7a1e5330b0febfe27d4c3c8b17c7c730fc94bb74b4fa4aae96e064a22aeb SHA1: 84bf0bb62fc409cfaaae266bb07593f94ae5fda8 MD5sum: 685265633a2b01787432be3692351731 Description: C++ library to handle mass spectrometry data (development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the development files for the non-GUI library. Package: libpappsomspp-core0 Source: libpappsomspp Version: 0.11.25-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 4087 Depends: libqt6sql6-sqlite, libboost-atomic1.83.0 (>= 1.83.0), libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libglx0, liblzf1 (>= 1.5), libodsstream0 (>= 0.9.14), libopengl0, libpwizlite3t64 (>= 3.0.14), libqt6concurrent6 (>= 6.1.2), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6network6 (>= 6.1.2), libqt6printsupport6 (>= 6.1.2), libqt6qml6 (>= 6.6.0), libqt6sql6 (>= 6.8.2), libqt6svg6 (>= 6.6.0), libqt6widgets6 (>= 6.1.2), libqt6xml6 (>= 6.1.2), libquazip1-qt6-1t64 (>= 1.4), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Conflicts: libpappsomspp0 Breaks: libpappsomspp0 Replaces: libpappsomspp0 Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libp/libpappsomspp/libpappsomspp-core0_0.11.25-1~trixie+1_amd64.deb Size: 1442460 SHA256: 2275ec8660299b8ef97e2e931c5597cae267b2920277172e430456b9aaa15f47 SHA1: 1a240f7835bbe8154b0f3e9afbca8600af9c0f2e MD5sum: f4276674791acde2cde99315d83293d9 Description: C++ library to handle mass spectrometry data (non-GUI runtime) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the non-GUI library. Package: libpappsomspp-core0-dbgsym Source: libpappsomspp Version: 0.11.25-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 35316 Depends: libpappsomspp-core0 (= 0.11.25-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-core0-dbgsym_0.11.25-1~trixie+1_amd64.deb Size: 35315012 SHA256: a0931f4b085703fe951c9b50513ab1a219415ca6dd4f05a319eed9bab4f70a33 SHA1: c92ec5d9374e1fcbd69f25372b18d71e214ffbc9 MD5sum: 3daa90c41d9ed82fdca81bb512d20694 Description: debug symbols for libpappsomspp-core0 Build-Ids: f6a7fd3dbcbc627ae010e911812239622aaef8bb Package: libpappsomspp-doc Source: libpappsomspp Version: 0.11.25-1~trixie+1 Architecture: all Maintainer: The Debichem Group Installed-Size: 75952 Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: doc Filename: pool/main/libp/libpappsomspp/libpappsomspp-doc_0.11.25-1~trixie+1_all.deb Size: 4942124 SHA256: 6f2580a402969eab41c3af97c6f615c29967b688074503c0e6581fa26546d647 SHA1: 2ce91298c9897e2a4d68ef0461437b99bf583dad MD5sum: f773350af3672c2afa0b755903ef73d1 Description: C++ library to handle mass spectrometry data (developer documentation) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package contains the developer documentation. Package: libpappsomspp-gui-dev Source: libpappsomspp Version: 0.11.25-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 1500 Depends: libpappsomspp-gui0 (= 0.11.25-1~trixie+1), libpappsomspp-core-dev (= 0.11.25-1~trixie+1) Recommends: libpappsomspp-doc Replaces: libpappsomspp-widget-dev Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libdevel Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui-dev_0.11.25-1~trixie+1_amd64.deb Size: 193316 SHA256: 7c09c8c3b2d9b74c6f49ca34872b5087ecb03785d92507cd8d65d7c60378d889 SHA1: 697523d0c9aee6de1690d7b0879939e5cba9960b MD5sum: d448ddc67a679197bd870648de98c020 Description: C++ library to handle mass spectrometry data (GUI development files) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the development files for the GUI library. Package: libpappsomspp-gui0 Source: libpappsomspp Version: 0.11.25-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 602 Depends: libpappsomspp-core0 (= 0.11.25-1~trixie+1), libboost-atomic1.83.0 (>= 1.83.0), libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libbz2-1.0, libc6 (>= 2.32), libgcc-s1 (>= 3.0), libglx0, liblzf1 (>= 1.5), libodsstream0 (>= 0.9.14), libopengl0, libpwizlite3t64 (>= 3.0.14), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6concurrent6 (>= 6.1.2), libqt6core5compat6 (>= 6.6.0), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6network6 (>= 6.1.2), libqt6printsupport6 (>= 6.1.2), libqt6qml6 (>= 6.6.0), libqt6sql6 (>= 6.1.2), libqt6svg6 (>= 6.6.0), libqt6widgets6 (>= 6.1.2), libqt6xml6 (>= 6.1.2), libquazip1-qt6-1t64 (>= 1.4), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Conflicts: libpappsomspp-widget0 Breaks: libpappsomspp-widget0 Replaces: libpappsomspp-widget0 Multi-Arch: same Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: libs Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui0_0.11.25-1~trixie+1_amd64.deb Size: 156212 SHA256: e8f502978161f6d88f6c42449feeb03e87364dbd9be4d60669ead1660bb8a1fa SHA1: e3736130dc0f524785feb0509915102775a24feb MD5sum: f9d95f26f4e40f149a95c5d30111937b Description: C++ library to handle mass spectrometry data (GUI runtime) libpappsomspp provides a simple API to perform a variety of tasks related to mass spectrometry. Although the library is proteomics oriented, it also features interesting functions to perform mass spectral data integrations. The main features are: . - abstractions for peptides, ions, amino acid modifications... - integrations to mass spectra, drift spectra, XIC chromatograms... . This package ships the GUI library. Package: libpappsomspp-gui0-dbgsym Source: libpappsomspp Version: 0.11.25-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 5440 Depends: libpappsomspp-gui0 (= 0.11.25-1~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpappsomspp/libpappsomspp-gui0-dbgsym_0.11.25-1~trixie+1_amd64.deb Size: 5405408 SHA256: cec5d9904a81eedaaeb6684e560546c1dda7b4cab922b4e72c5381b67310d2f9 SHA1: 3cfe2833a5be268107abbba778f391f5e3a18c96 MD5sum: 0e0c2432031d150a258c266d06dd7bc7 Description: debug symbols for libpappsomspp-gui0 Build-Ids: f73bfac587bf7fa8fe4b0a12132fa8f18255971d Package: libpwizlite-dev Source: libpwizlite Version: 3.0.14-2~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 11424 Depends: libpwizlite3t64 (= 3.0.14-2~trixie+1) Replaces: libpwizlite-dev (<< 3.0.14-2~trixie+1) Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Priority: optional Section: libdevel Filename: pool/main/libp/libpwizlite/libpwizlite-dev_3.0.14-2~trixie+1_amd64.deb Size: 1251532 SHA256: e16bd4d2cae300bb1afae8256edefed8d447839fff4873225be3d08a678ecba8 SHA1: b4f49637e463ca56a78fede526e2bc9bd9933fba MD5sum: 9ab5285552d6688e2c8eb5622b8ca56d Description: Library to load mzML/mzXML files (dev files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the development files. Package: libpwizlite3t64 Source: libpwizlite Version: 3.0.14-2~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 4947 Depends: libboost-chrono1.83.0t64 (>= 1.83.0), libboost-filesystem1.83.0 (>= 1.83.0), libboost-iostreams1.83.0 (>= 1.83.0), libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.4), libstdc++6 (>= 14), zlib1g (>= 1:1.2.0) Breaks: libpwizlite3 (<< 3.0.14-2~trixie+1) Replaces: libpwizlite3, libpwizlite3t64 (<< 3.0.14-2~trixie+1) Provides: libpwizlite3 (= 3.0.14-2~trixie+1) Multi-Arch: same Homepage: https://salsa.debian.org/debichem-team/libpwizlite Priority: optional Section: libs Filename: pool/main/libp/libpwizlite/libpwizlite3t64_3.0.14-2~trixie+1_amd64.deb Size: 911644 SHA256: 99c1b9bf519d728ae9d8674c378950e4be41be4f7d6384f6a0e82699db02a4d6 SHA1: bb13b1bff17a2d7bf56964dd9f8befccedb65753 MD5sum: 25141c4c56460917c6ff53b937b28918 Description: Library to load mzML/mzXML files (runtime files) This library is a dumbed-down version of the Proteowizard library. This library only contains the required features to load standard mzML/mzXML mass spectrometry data files. . See http://proteowizard.sourceforge.net/ for the original project. . This package ships the runtime library files. Package: libpwizlite3t64-dbgsym Source: libpwizlite Version: 3.0.14-2~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 13203 Depends: libpwizlite3t64 (= 3.0.14-2~trixie+1) Multi-Arch: same Priority: optional Section: debug Filename: pool/main/libp/libpwizlite/libpwizlite3t64-dbgsym_3.0.14-2~trixie+1_amd64.deb Size: 12856212 SHA256: e415ac9b6b10db39f8668aa25e3dde825f4a590c5233ae45d022a01fe659d087 SHA1: 959a0a1df60216695ad32eb0d3d015409520a858 MD5sum: d87185dfc3829497fc7becce4894fea7 Description: debug symbols for libpwizlite3t64 Build-Ids: 0c03c058f48bd2496425a8ab8ec2126dc42a3e8c Package: metapappso Version: 0.1.16-1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 118 Depends: htcondor, grouping-protein, i2masschroq Homepage: https://forgemia.inra.fr/pappso/metapappso Priority: optional Section: science Filename: pool/main/m/metapappso/metapappso_0.1.16-1_amd64.deb Size: 8488 SHA256: a446536302d47a81f7950153b58607b4bb9c6787beea494de9f6d92e796c3cd8 SHA1: 267ad262cef5a6e227026dc3180feda439b32a7c MD5sum: 84ae6a0cbfa575f3e0032b1edee0b6f2 Description: metapappso scripts Package: ods2tsv Source: libodsstream Version: 0.9.19-1~trixie+1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 102 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (= 0.9.19-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Homepage: http://pappso.inrae.fr/bioinfo Priority: optional Section: text Filename: pool/main/libo/libodsstream/ods2tsv_0.9.19-1~trixie+1_amd64.deb Size: 23780 SHA256: c8461c885bc44371560d24d6588594f91be399609f15abee32b414079fea636d SHA1: 49f3e836c7fb4a05bbb9381feabdab1a2366f634 MD5sum: cfa02dab5a75e1054857508ad291ab9f Description: ODS to TSV file converter Simple command line interface utility that takes one or more ods files as input and convert them into tabulated separated value (tsv simple text files). Each ods file will create an output directory of the same name, containing all the spreadsheets (one tsv file per spreadsheet). Package: ods2tsv-dbgsym Source: libodsstream Version: 0.9.19-1~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 545 Depends: ods2tsv (= 0.9.19-1~trixie+1) Priority: optional Section: debug Filename: pool/main/libo/libodsstream/ods2tsv-dbgsym_0.9.19-1~trixie+1_amd64.deb Size: 506460 SHA256: 1c1381c397165b13b6629917734f7e104f19b8e9b424d3f969c0805845c1b3b8 SHA1: edb83091e35d6f3bd3f4865a32cef73e36c6ac3a MD5sum: 9b99a506a7669a880182daa24d502506 Description: debug symbols for ods2tsv Build-Ids: 039bbefb9cbd86067d4d18b1ff1f9dcaae076f11 1c9d9c4d6b171b0f23ca129fb2d2a7f60d0fd333 Package: pappsoms-tools Version: 0.2.58-1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 934 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-gui0 (>= 0.11.25-1~trixie+1), libqcustomplot2.1-qt6 (>= 2.1.0+dfsg1), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6widgets6 (>= 6.1.2), libstdc++6 (>= 14) Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: libs Filename: pool/main/p/pappsoms-tools/pappsoms-tools_0.2.58-1_amd64.deb Size: 190008 SHA256: fdbb54ff4909671f01b2d2bad8d39bf16b7c7ba7dc6314cb3eb44dd76cdd3e3e SHA1: 4038e09245294f4c074830d3c3afbd577a9ff578 MD5sum: 7256b92017e9202c381785650b52f620 Description: set of proteomic tools used on PAPPSO. computes peptide mass, isotope ratio, fragmentation products, protein grouper. Package: pappsoms-tools-dbgsym Source: pappsoms-tools Version: 0.2.58-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 9607 Depends: pappsoms-tools (= 0.2.58-1) Priority: optional Section: debug Filename: pool/main/p/pappsoms-tools/pappsoms-tools-dbgsym_0.2.58-1_amd64.deb Size: 9367436 SHA256: eae6c75cb459e86253e30dad6e8caf5079364f04a25c1af042ec26bdab66678b SHA1: 8af1a0901f1194e7e604f629b98dfc5d2d15feaf MD5sum: 7124bc87af5faf15938fd95673906c47 Description: debug symbols for pappsoms-tools Build-Ids: 2337c42f9bc7c5ee0a5551bfce67969ef9b24b9c 41f565ed112ac598128b4467a91d561ad75ba4c6 5aab5f4935912ddb68232362d74e408e76b9599f 6080fbb69b6c6b69e8bd3b3c7bbb34d350701cda 6cd2c1808f802c9479212a2c57ca471932694acb 8ae93e8dc12be74aa1d7f5250c0a6d309b985e49 b5f855827929245e4714d2bcdb82ea434c2bf469 c2071c5973c7fefb84f4401122853903bd9e9459 dbc3b6eb6d5687944a82d9a84faff7f1eb45c2d6 dc38495d848f1eca626bc3586c1fee87fc4262ff df78508b12cb2249e73b73ec62ca44e9f8efc843 f217d14a5afc78c9be4a1846c5bd05f3cfdd99b3 Package: python3-diacmdbuilder Source: diacmdbuilder Version: 1.0.1-1 Architecture: all Maintainer: PAPPSO Installed-Size: 158 Depends: python3:any, python3, python3-pyqt5 Homepage: https://forge.inrae.fr/pappso/experiment/dia_scripts Priority: optional Section: python Filename: pool/main/d/diacmdbuilder/python3-diacmdbuilder_1.0.1-1_all.deb Size: 32492 SHA256: 289677b654ee6b2122f6bfd4e543c00717835e0a41c6457e0ddb923e42f4b967 SHA1: 9629538971abbd61016ad76c135648a5cfda60dd MD5sum: e362b58060f4966c05c292ffa59edab9 Description: helper to build command line for linux Description longue de votre package Package: python3-pyarrow Version: 0:24.0.0-1~w2d0 Architecture: amd64 Maintainer: wheel2deb Installed-Size: 150841 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3:any Priority: optional Section: python Filename: pool/main/p/python3-pyarrow/python3-pyarrow_24.0.0-1~w2d0_amd64.deb Size: 33544212 SHA256: e3d8903208cea7b6bc3170a318d20533daf298e9d58cce1db0a4b73a4e2e6f0c SHA1: de38c09ab546c465cd57013815c2ea3ff5ebd073 MD5sum: 6b99711e46f6a4e2dd01c8774f07f1cb Description: Python library for Apache Arrow This package was generated by wheel2deb v0 Package: python3-pycborstream Source: pycborstream Version: 0.0.1-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 32 Depends: python3:any, python3-cbor2 (>= 5.9.0), python3-cbor2 (<< 6.0.0) Homepage: None Priority: optional Section: python Filename: pool/main/p/pycborstream/python3-pycborstream_0.0.1-1_all.deb Size: 4760 SHA256: 936dd8aa6c40f0e268dd35f9d3309915b9d28d30466828166f08fb54afe3f0ab SHA1: 2585f8077e4b4df350c216509c623a985b2c99c2 MD5sum: fd562d012608d53cc0df47935fae61f6 Description: Stream API using cbor2 to read and write CBOR data. # pycborstream . Simple python API to handle CBOR files as streams. It provides lazy methods to read and write huge CBOR data files saving memory: data can be treated on the fly without having to load the entire structure. Package: python3-pyodsstream Source: pyodsstream Version: 0.0.9-1 Architecture: all Maintainer: Olivier Langella Installed-Size: 238 Depends: python3:any, python3-importlib-resources, python3-colormap Homepage: None Priority: optional Section: python Filename: pool/main/p/pyodsstream/python3-pyodsstream_0.0.9-1_all.deb Size: 15424 SHA256: 4df7d09de156b1fd686deb8e72c4b99381ca7b1c29029618de8cd5ef71f1dd91 SHA1: 7f4b41d39aa60b94c82065cbc5f32850c3ca4c95 MD5sum: 76df0e2b20574f62b5ee5ca32c624d8b Description: Stream API to read and write Open Document Spreadsheet (ODS) # pyodsstream . Simple python API to handle ODS and tabulated files as streams. It provides lazy methods to read and write Open Document Spreadsheet or TSV files saving memory: data can be treated on the fly without having to load the entire tables. . ## Simple usage: write an ODS file . ```python from pyodsstream import OdsDocWriter . ods_file = "test.ods" with open(ods_file, "wb") as fp: writer = OdsDocWriter(fp) writer.write_sheet("This is a new sheet") writer.write_cell("This is a cell") writer.write_cell(15) writer.write_line() writer.write_cell("This is a cell on the second line") writer.close() ``` Package: python3-typst Version: 0:0.15.0-1~w2d0 Architecture: amd64 Maintainer: wheel2deb Installed-Size: 558873 Depends: python3 (>= 3.8~), python3:any Priority: optional Section: python Filename: pool/main/p/python3-typst/python3-typst_0.15.0-1~w2d0_amd64.deb Size: 96469984 SHA256: 0e4a44981732da80e65480b8c7f16b83fbf3ba144f22e04943bd269bf9d7f832 SHA1: 44d21f131266bc9226676b9ff1da5922e0e95743 MD5sum: 1332627f94e5139b46676646bedb5dfd Description: Python binding to Typst, a new markup-based typesetting system that is powerful and easy to learn. This package was generated by wheel2deb v0 Package: specoms Version: 0.0.25-2~trixie+1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 1006 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-core0 (>= 0.10.2), libqt6concurrent6 (>= 6.1.2), libqt6core6t64 (>= 6.8.2), libqt6gui6 (>= 6.4.0), libqt6widgets6 (>= 6.1.2), libstdc++6 (>= 14), libpappsomspp-gui0 (>= 0.9.22) Priority: optional Section: science Filename: pool/main/s/specoms/specoms_0.0.25-2~trixie+1_amd64.deb Size: 218452 SHA256: df32f49bb20b694c6251fabaf385c9485ce2ce004aac3a0a00bea415b6f5fa1f SHA1: 9212bf7416c688281f39c7c1c2bd6b94a28e8519 MD5sum: 0ba7de7cf215e5748e7635a22bef4505 Description: Open Modification Search algorithm for MS/MS peptide identification DeepProt is based on SpecOMS published in David et al. 2017. Package: specoms-dbgsym Source: specoms Version: 0.0.25-2~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 17613 Depends: specoms (= 0.0.25-2~trixie+1) Priority: optional Section: debug Filename: pool/main/s/specoms/specoms-dbgsym_0.0.25-2~trixie+1_amd64.deb Size: 17644052 SHA256: e8a3ef9ff7a641770fb1f95be93588cb6e95d786ff45b339616bdc594f9236b8 SHA1: 5f30e9aef66cbcda90e0a2c66e93df1bd9d7bc35 MD5sum: c874c8e1df3a02757675adaaf4214f02 Description: debug symbols for specoms Build-Ids: 619e4a0a61dd43ea2866b78fa721d47eaa9afe68 e9b2f6c93ba62fcc4983c2451b5c839db18654bf Package: specpeptidoms Version: 0.1.1-3~trixie+1 Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 896 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libodsstream0 (>= 0.9.14), libpappsomspp-gui0 (>= 0.11.25-1~trixie+1), libqt6concurrent6 (>= 6.1.2), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Priority: optional Section: science Filename: pool/main/s/specpeptidoms/specpeptidoms_0.1.1-3~trixie+1_amd64.deb Size: 188336 SHA256: c712e7905bcc9d5ec6d5c612e9b4386d22c8eb98c97abbbff9665923e73a7ea4 SHA1: b94cdc39ccaee95d94adea3a10e3152de4506dbb MD5sum: 87cdce2ebbe85bdfb58f39beb0659f1a Description: MS/MS peptide identification directly on protein sequences not requiring tryptic digestion and peptide modeling SpecPeptidOMS is based on the work published in https://pubs.acs.org/doi/10.1021/acs.jproteome.4c00870. Package: specpeptidoms-dbgsym Source: specpeptidoms Version: 0.1.1-3~trixie+1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Olivier Langella Installed-Size: 9567 Depends: specpeptidoms (= 0.1.1-3~trixie+1) Priority: optional Section: debug Filename: pool/main/s/specpeptidoms/specpeptidoms-dbgsym_0.1.1-3~trixie+1_amd64.deb Size: 9306432 SHA256: 27bb974d9807f10fb1dcf7d2bf80280a7f92d4b7085956696768c4e3d9729bc6 SHA1: 2e2a2bcaa367b353bfadfed9b4a716c8f00e763b MD5sum: b950aa2b3cc5597f8a597cc40168e550 Description: debug symbols for specpeptidoms Build-Ids: 26c19ed5f964cbb5d0640b74acc677f25df2c7e3 3bf22b1fd2c67100ee94b04dbedb75b4663de309 5483cf2aec76416be6f504fd9923420abb268ae7 635b9af71a9693f5e33035e991c9ccd8df0167b0 6487a85738a34e19575857a1dd03d4e6ef97bd77 7a041a29faa2b9f3c2e51a07b11ea3d7f3767011 d798e781a198ccba64bb1143862afc6cdcfed756 da985ec27b0f32eea81038d1b2890273fa861ec2 fbe7c58823dd1cfe7836c142892f8dc4ca16d3c5 Package: tandemng Version: 0.3.17-4~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 2178 Depends: libc6 (>= 2.38), libexpat1 (>= 2.0.1), libgcc-s1 (>= 3.0), libpappsomspp-gui0 (>= 0.11.25-1~trixie+1), libqt6core6t64 (>= 6.8.2), libstdc++6 (>= 14) Conflicts: tandemng-mass Homepage: http://www.thegpm.org/TANDEM/ Priority: optional Section: science Filename: pool/main/t/tandemng/tandemng_0.3.17-4~trixie1_amd64.deb Size: 389120 SHA256: a4e8cba89d48a496c1e805a02d61315f75a2546931a56aa2991d254a57b7ede2 SHA1: 4c84696e0c910aa660d5201861298328731bb1c1 MD5sum: 604c00620a98fc13d7b337dbd9ed1f41 Description: mass spectrometry software for protein identification X! Tandem can match tandem mass spectra with peptide sequences, in a process that is commonly used to perform protein identification. . This software has a very simple, unsophisticated application programming interface (API): it simply takes an XML file of instructions on its command line, and outputs the results into an XML file, which has been specified in the input XML file. The output file format is described at http://www.thegpm.org/docs/X_series_output_form.pdf. . Unlike some earlier generation search engines, all of the X! Series search engines calculate statistical confidence (expectation values) for all of the individual spectrum-to-sequence assignments. They also reassemble all of the peptide assignments in a data set onto the known protein sequences and assign the statistical confidence that this assembly and alignment is non-random. The formula for which can be found here. Therefore, separate assembly and statistical analysis software, e.g. PeptideProphet and ProteinProphet, do not need to be used. Package: tandemng-dbgsym Source: tandemng Version: 0.3.17-4~trixie1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 16298 Depends: tandemng (= 0.3.17-4~trixie1) Priority: optional Section: debug Filename: pool/main/t/tandemng/tandemng-dbgsym_0.3.17-4~trixie1_amd64.deb Size: 16072464 SHA256: ddd9f729fc8a059b8f05e4b2a461619dd40de18763251f07a3a0e509702c6979 SHA1: 0bad61b7b47c6b3a8ae6deac249221e50de32fcb MD5sum: 14ddb4786d80b845f7ea4fb01cbff22f Description: debug symbols for tandemng Build-Ids: 54fdef718ab2df52e7d72a08270a2b04fed034eb a9f21c450f5b761516610da8df539ffca44a8247 da6a907ae13e2afec8d406306937f58fa391cf50 Package: xtpcpp Source: i2masschroq Version: 1.3.8-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 30 Depends: i2masschroq, debconf, po-debconf Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/i/i2masschroq/xtpcpp_1.3.8-1~trixie1_amd64.deb Size: 16468 SHA256: 3a142b49afc48b82a5d23baae779674dbdcf3edc5924ad36923703f1d24aab43 SHA1: bd3e8c9d4e4b8a8fba6a416956cd338f89fb429d MD5sum: 3285f7383679ed32998dd4a3e5583587 Description: Transitional package from xtpcpp to i2masschroq The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time. Package: xtpcpp-tools Source: i2masschroq Version: 1.3.8-1~trixie1 Architecture: amd64 Maintainer: The Debichem Group Installed-Size: 30 Depends: i2masschroq-tools, debconf, po-debconf Homepage: http://pappso.inra.fr/bioinfo Priority: optional Section: oldlibs Filename: pool/main/i/i2masschroq/xtpcpp-tools_1.3.8-1~trixie1_amd64.deb Size: 16480 SHA256: 2ef3fa49cc0eb561c4be32e2e288053fef3f63d9b8f79ee013e1a63bccd81487 SHA1: 051a90eb394dea5190feb3d134a705b949bac981 MD5sum: 25874c7602cf60c0bfa9dac471828f32 Description: Transitional package from xtpcpp-tools to i2masschroq-tools The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time.